a8ccb8e116
- [x] add `concretize.lp`, `spack.yaml`, etc. to licensed files
- [x] update all licensed files to say 2013-2021 using
`spack license update-copyright-year`
- [x] appease mypy with some additions to package.py that needed
for oneapi.py
32 lines
1.2 KiB
Python
32 lines
1.2 KiB
Python
# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class PyWhatshap(PythonPackage):
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"""WhatsHap is a software for phasing genomic variants using DNA
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sequencing reads, also called read-based phasing or haplotype
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assembly."""
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homepage = "https://whatshap.readthedocs.io/en/latest/"
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url = "https://bitbucket.org/whatshap/whatshap/get/v0.17.tar.gz"
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version('0.17', sha256='5f342cbd28f5d3e79490754f067aa67e8bb059da1c042d944b9f75663ef6b055')
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depends_on('python@3.4:', type=('build', 'run'))
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depends_on('py-setuptools', type='build')
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depends_on('py-cython@0.17:', type=('build', 'run'))
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depends_on('py-pysam@0.14.0:', type='run')
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depends_on('py-xopen', type='run')
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depends_on('py-pyvcf', type='run')
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depends_on('py-pyfaidx', type='run')
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depends_on('py-networkx', type='run')
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def patch(self):
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# there is a stray \xe2 somewhere in setup.py,
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# explicitly using utf-8 will let the install proceed
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filter_file('^"""$', '#coding: utf-8\n"""', 'setup.py')
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