38 lines
2.0 KiB
Python
38 lines
2.0 KiB
Python
# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class RBiomart(RPackage):
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"""In recent years a wealth of biological data has become available in
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public data repositories. Easy access to these valuable data resources
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and firm integration with data analysis is needed for comprehensive
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bioinformatics data analysis. biomaRt provides an interface to a growing
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collection of databases implementing the BioMart software suite
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(http://www.biomart.org). The package enables retrieval of large amounts
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of data in a uniform way without the need to know the underlying
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database schemas or write complex SQL queries. Examples of BioMart
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databases are Ensembl, COSMIC, Uniprot, HGNC, Gramene, Wormbase and
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dbSNP mapped to Ensembl. These major databases give biomaRt users direct
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access to a diverse set of data and enable a wide range of powerful
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online queries from gene annotation to database mining."""
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homepage = "https://bioconductor.org/packages/biomaRt/"
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git = "https://git.bioconductor.org/packages/biomaRt.git"
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version('2.36.1', commit='5634e57e20199f9dc1f8b927eb3893143fc02f4f')
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version('2.34.2', commit='a7030915fbc6120cc6812aefdedba423a207459b')
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version('2.32.1', commit='f84d74424fa599f6d08f8db4612ca09914a9087f')
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depends_on('r-xml', type=('build', 'run'))
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depends_on('r-rcurl', type=('build', 'run'))
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depends_on('r-annotationdbi', type=('build', 'run'))
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depends_on('r-progress', type=('build', 'run'), when='@2.34.2:')
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depends_on('r-stringr', type=('build', 'run'), when='@2.34.2:')
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depends_on('r-httr', type=('build', 'run'), when='@2.34.2:')
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depends_on('r@3.4.0:3.4.9', when='@2.32.1:2.35.9', type=('build', 'run'))
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depends_on('r@3.5.0:3.5.9', when='@2.36.1', type=('build', 'run'))
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