reinstall conda/mamba in a separate, unconditional step

makes it more likely that subsequent conda installs will succeed

- fix indentation on the upgrade steps so they aren't run every iteration
- no longer need to bump required versions

tljh/conda.py

@@ -98,7 +98,7 @@ def install_miniconda(installer_path, prefix):
     fix_permissions(prefix)
 
 
-def ensure_conda_packages(prefix, packages, force=False):
+def ensure_conda_packages(prefix, packages, force_reinstall=False):
     """
     Ensure packages (from conda-forge) are installed in the conda prefix.
 
@@ -112,7 +112,7 @@ def ensure_conda_packages(prefix, packages, force=False):
 
     cmd = [conda_executable, "install", "--yes"]
 
-    if force:
+    if force_reinstall:
         # use force-reinstall, e.g. for conda/mamba to ensure everything is okay
         # avoids problems with RemoveError upgrading conda from old versions
         cmd += ["--force-reinstall"]

tljh/installer.py

@@ -148,8 +148,8 @@ MAMBAFORGE_CHECKSUMS = {
 # minimum versions of packages
 MINIMUM_VERSIONS = {
     # if conda/mamba/pip are lower than this, upgrade them before installing the user packages
-    "mamba": "1.4.2",
-    "conda": "23.3.1",
+    "mamba": "0.16.0",
+    "conda": "4.10",
     "pip": "23.1.2",
     # minimum Python version (if not matched, abort to avoid big disruptive updates)
     "python": "3.9",
@@ -242,6 +242,20 @@ def ensure_user_environment(user_requirements_txt_file):
                 )
                 to_upgrade.append(pkg)
 
+    # force reinstall conda/mamba to ensure a basically consistent env
+    # avoids issues with RemoveError: 'requests' is a dependency of conda
+    if not is_fresh_install:
+        # force-reinstall doesn't upgrade packages
+        # it reinstalls them in-place
+        # only include packages already installed here
+        to_reinstall = {"conda", "mamba"} & set(package_versions)
+        logger.info(
+            f"Reinstalling {', '.join(to_reinstall)} to ensure a consistent environment"
+        )
+        conda.ensure_conda_packages(
+            USER_ENV_PREFIX, list(to_reinstall), force_reinstall=True
+        )
+
     cf_pkgs_to_upgrade = list(set(to_upgrade) & {"conda", "mamba"})
     if cf_pkgs_to_upgrade:
         conda.ensure_conda_packages(
@@ -249,9 +263,8 @@ def ensure_user_environment(user_requirements_txt_file):
             # we _could_ explicitly pin Python here,
             # but conda already does this by default
             cf_pkgs_to_upgrade,
-                # use force to avoid RemoveError: 'requests' is a dependency of conda
-                force=True,
         )
+
     pypi_pkgs_to_upgrade = list(set(to_upgrade) & {"pip"})
     if pypi_pkgs_to_upgrade:
         conda.ensure_pip_packages(