""" Test conda commandline wrappers """ from tljh import conda import os import pytest import subprocess import tempfile @pytest.fixture(scope="module") def prefix(): """ Provide a temporary directory with a mambaforge conda environment """ # see https://github.com/conda-forge/miniforge/releases mambaforge_version = "4.10.3-7" if os.uname().machine == "aarch64": installer_sha256 = ( "ac95f137b287b3408e4f67f07a284357b1119ee157373b788b34e770ef2392b2" ) elif os.uname().machine == "x86_64": installer_sha256 = ( "fc872522ec427fcab10167a93e802efaf251024b58cc27b084b915a9a73c4474" ) installer_url = "https://github.com/conda-forge/miniforge/releases/download/{v}/Mambaforge-{v}-Linux-{arch}.sh".format( v=mambaforge_version, arch=os.uname().machine ) with tempfile.TemporaryDirectory() as tmpdir: with conda.download_miniconda_installer( installer_url, installer_sha256 ) as installer_path: conda.install_miniconda(installer_path, tmpdir) conda.ensure_conda_packages(tmpdir, ["conda==4.10.3"]) yield tmpdir def test_ensure_packages(prefix): """ Test installing packages in conda environment """ conda.ensure_conda_packages(prefix, ["numpy"]) # Throws an error if this fails subprocess.check_call([os.path.join(prefix, "bin", "python"), "-c", "import numpy"]) def test_ensure_channel_packages(prefix): """ Test installing packages in conda environment """ conda.ensure_conda_packages(prefix, ["csvtk"], channels=('conda-forge', 'bioconda')) # Throws an error if this fails subprocess.check_call([os.path.join(prefix, "bin", "csvtk"), "cat", "--help"]) def test_ensure_pip_packages(prefix): """ Test installing pip packages in conda environment """ conda.ensure_conda_packages(prefix, ["pip"]) conda.ensure_pip_packages(prefix, ["numpy"]) # Throws an error if this fails subprocess.check_call([os.path.join(prefix, "bin", "python"), "-c", "import numpy"]) def test_ensure_pip_requirements(prefix): """ Test installing pip packages with requirements.txt in conda environment """ conda.ensure_conda_packages(prefix, ["pip"]) with tempfile.NamedTemporaryFile() as f: # Sample small package to test f.write(b"there") f.flush() conda.ensure_pip_requirements(prefix, f.name) subprocess.check_call([os.path.join(prefix, "bin", "python"), "-c", "import there"])